PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070538.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 192aa    MW: 21111 Da    PI: 5.5395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070538.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013052123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ Fs+   L  H++ H
  XP_027070538.1 30 YSCSFCKRGFSNAQALGGHMNIH 52
                    99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
MEIDLSNAKK ADQITWSSGD PDLLGHARGY SCSFCKRGFS NAQALGGHMN IHRKDRAKLK  60
EFAGRDNNIF SLDVTERDAS APAPASAPNP NPPSPSVEFH DTVMQLELSG DERSCPPTTT  120
RASTSPNHQE IYHDYTGNDQ LQLSLFAETS SSNNNEVESN PFNRQSSHGE SFKELDLELR  180
LGPEPHQASK RG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-16C2H2 family protein