PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071287.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 797aa MW: 88564.9 Da PI: 5.6392

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071287.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.7	1e-18	679	774	2	94
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 +kvl++sdv+++gr+vlpkk ae+h +++++ ++ + led ++++W++++++ ++ks++y+l+ ++ +Fv+ ngL+egDf+v++ ++ +++ XP_027071287.1 679 QKVLKQSDVGNLGRIVLPKKEAETHlpELESRDGIPIALEDiGTSNVWNMRYRFwpNNKSRMYLLE-NTGDFVRVNGLQEGDFIVIY--SDtKCG 770 79***********************888999999*7778***99777777777777.******************..344887 PP ..EE CS B3 91 elvv 94 ++++ XP_027071287.1 771 KYLI 774 6665 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MSKNASEALQ AGDDGDGLIK GMDVIMEESA FPATAFDDDE DHMKQDEQVM SVNGGCGERE 60 IWFGRDHRGH DQDNSLLDDD DNDADVNNDP CSLFYTDFPP XPDFPCMSSS SSSSSTPLPA 120 RAVASTSSSS SSSSSSAATS WAVFKSEGDS FHPNSEAEMQ RYHPLERQCD EVVNAAAPAA 180 ALSSTASMEI LPLPDDYCSN RDMNCMNAME NFGYMDLLDN SDIWDPCSIF ESENVNPPQQ 240 DHDHQFQERK PASSACATPN HQEDQIQAPS QHHQPLEEDG NDNGNDGGLY FLQGNSELGV 300 IFLEWLKQNK DHISAEDMRS IKLKRSTIDC ASKRLGSTKE GKKQLLKLIL EWVEQYQLHK 360 RRATEMGSRA AADFDPISYH YHERHRLLQL LTKIVVPCSH QDPSTACLSP SPSPWVPPAP 420 PCESCPNSLA APFPPTMGGY ARDPYSSAAA ATVAVPVPVS NQTMNNANLY LVPAEYHQPT 480 DSPQSWSGPY SMPQAQYNPF PDNTKLPVSG SQAQALYANP YPYQVFDGGS GERLVRYGSS 540 ATKEARKKRM ARQRRISLHQ YRHPSSYHHH THQNQPQSLV NEQHATRIPA VGDDCTSNSR 600 ANPGNWIYWS PAVPPPAPAP MASTMPPLVS SDKPSHRQAP TQPVDRAYLQ PQQNHQRQVP 660 SSDRKQSWKT EKNLKFLLQK VLKQSDVGNL GRIVLPKKEA ETHLPELESR DGIPIALEDI 720 GTSNVWNMRY RFWPNNKSRM YLLENTGDFV RVNGLQEGDF IVIYSDTKCG KYLIERSESS 780 AARVKIRGKE AGKEKPA

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MSKNASEALQ AGDDGDGLIK GMDVIMEESA FPATAFDDDE DHMKQDEQVM SVNGGCGERE  60
IWFGRDHRGH DQDNSLLDDD DNDADVNNDP CSLFYTDFPP XPDFPCMSSS SSSSSTPLPA  120
RAVASTSSSS SSSSSSAATS WAVFKSEGDS FHPNSEAEMQ RYHPLERQCD EVVNAAAPAA  180
ALSSTASMEI LPLPDDYCSN RDMNCMNAME NFGYMDLLDN SDIWDPCSIF ESENVNPPQQ  240
DHDHQFQERK PASSACATPN HQEDQIQAPS QHHQPLEEDG NDNGNDGGLY FLQGNSELGV  300
IFLEWLKQNK DHISAEDMRS IKLKRSTIDC ASKRLGSTKE GKKQLLKLIL EWVEQYQLHK  360
RRATEMGSRA AADFDPISYH YHERHRLLQL LTKIVVPCSH QDPSTACLSP SPSPWVPPAP  420
PCESCPNSLA APFPPTMGGY ARDPYSSAAA ATVAVPVPVS NQTMNNANLY LVPAEYHQPT  480
DSPQSWSGPY SMPQAQYNPF PDNTKLPVSG SQAQALYANP YPYQVFDGGS GERLVRYGSS  540
ATKEARKKRM ARQRRISLHQ YRHPSSYHHH THQNQPQSLV NEQHATRIPA VGDDCTSNSR  600
ANPGNWIYWS PAVPPPAPAP MASTMPPLVS SDKPSHRQAP TQPVDRAYLQ PQQNHQRQVP  660
SSDRKQSWKT EKNLKFLLQK VLKQSDVGNL GRIVLPKKEA ETHLPELESR DGIPIALEDI  720
GTSNVWNMRY RFWPNNKSRM YLLENTGDFV RVNGLQEGDF IVIYSDTKCG KYLIERSESS  780
AARVKIRGKE AGKEKPA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24650.1	9e-81	B3 family protein