PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071552.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 397aa MW: 44607.4 Da PI: 9.2335

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.1	8.6e-25	82	126	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ XP_027071552.1 82 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQ 126 79****************************************997 PP
2	QLQ	55.2	2.1e-19	14	45	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FTa+Q+q+L++Q+l++Ky++++ PvPp+Ll XP_027071552.1 14 PFTASQWQELEHQALIFKYMVSGTPVPPDLLY 45 8*****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MSATTSARSS SRFPFTASQW QELEHQALIF KYMVSGTPVP PDLLYTVRRS LDSSLSSKLL 60 FHQPNVLGWN SCFQMGFGRK IDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS 120 RKPVEQQLIT TPIPPPPIIS PSSISNNNTS STATPPTAIP ITSISKNHPH HPLVPPLITL 180 SLTSRTSHDR ISSEENSTNY FLGSGPYSQA SKGYSSYGQG GKEEVDEHAF FCEASGTVRN 240 LSGGSSVVDH DGTSSWQLAP LTMGSPSGSH LKQRSSYSVS NGGHSSYLQL QSLNHDNDYN 300 TTSRQQKQAS QQQYYGLGDR DDHQNKRVMH RFFDEWPPKD NKDSCWLDNN DHHDHKLSKI 360 QLSISMPNAS SHHDFFMTRN GGLNNLLLFH AVAFRHY

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MSATTSARSS SRFPFTASQW QELEHQALIF KYMVSGTPVP PDLLYTVRRS LDSSLSSKLL  60
FHQPNVLGWN SCFQMGFGRK IDPEPGRCRR TDGKKWRCSK EAYPDSKYCE RHMHRGRNRS  120
RKPVEQQLIT TPIPPPPIIS PSSISNNNTS STATPPTAIP ITSISKNHPH HPLVPPLITL  180
SLTSRTSHDR ISSEENSTNY FLGSGPYSQA SKGYSSYGQG GKEEVDEHAF FCEASGTVRN  240
LSGGSSVVDH DGTSSWQLAP LTMGSPSGSH LKQRSSYSVS NGGHSSYLQL QSLNHDNDYN  300
TTSRQQKQAS QQQYYGLGDR DDHQNKRVMH RFFDEWPPKD NKDSCWLDNN DHHDHKLSKI  360
QLSISMPNAS SHHDFFMTRN GGLNNLLLFH AVAFRHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	7e-49	GRF family protein