PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027071612.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YB
Protein Properties Length: 185aa    MW: 20316.7 Da    PI: 4.7669
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027071612.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.16e-5440135297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lPanakisk+aket+qec+sefisfvt+easdkc++ekrkt+ngdd++wal++lGf++y+eplk yl+++relege
  XP_027071612.1  40 KEQDRLLPIANVGRIMKQILPANAKISKEAKETMQECASEFISFVTGEASDKCHKEKRKTVNGDDICWALGSLGFDEYAEPLKRYLNRFRELEGE 134
                     89*******************************************************************************************99 PP

           NF-YB  97 k 97 
                     +
  XP_027071612.1 135 R 135
                     7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MVDSIIEGEG EGEGEGEALN KYKASVAAGC GSGDDGMAIK EQDRLLPIAN VGRIMKQILP  60
ANAKISKEAK ETMQECASEF ISFVTGEASD KCHKEKRKTV NGDDICWALG SLGFDEYAEP  120
LKRYLNRFRE LEGERANQNK SGNSEEKVMN QNLAEPRKIT THVSPTSINF NVMDESSNSL  180
SRSCF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-63NF-YB family protein