PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072117.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 797aa MW: 91904.7 Da PI: 7.4144

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.4	6.7e-25	70	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk GF +r sk +k k+++ + +r f+Cs+egk+ ++k++ + +r+etr++C a++k++ +k gk++v +++ eHnHel+ XP_027072117.1 70 NFYQKYAKASGFGTRLSKGHKDKNSDLMLDRVFCCSREGKKPKDKRN-MIVKCPRPETRCDCSARMKISCRKGGKYRVVQFVAEHNHELS 158 6****************************************9999.99999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MENDLPTHEV QSCRKLDFED VDLQEINDNA LPLCITDGNQ GNQIFLPLAI PDDLIPKLDM 60 EFDTEVAAKN FYQKYAKASG FGTRLSKGHK DKNSDLMLDR VFCCSREGKK PKDKRNMIVK 120 CPRPETRCDC SARMKISCRK GGKYRVVQFV AEHNHELSTP SKTHLFRSHR HLTMAHEAEI 180 DMARSCGITP KQSIELMSKQ VGGRENLGFI RDDLKNYLRS KRSIPMMQGD TGGVLEYLQG 240 MQLEDPNFFY AIQVDEDDLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGRPIALFV 300 GVNHHKQTTV FGAALLYDET ILTFEWLFDT FAKAMMEKIP RTILTDQDGR MATALASQWP 360 TTYHRLCIWH IYQNAATHLA DVFKDFQNFA ADFSHCIYDY ENEDDFFEGW SEMLKTYGLE 420 DNKWLKKMFD IKEKWALVYG RETFCADMTT TQRSESMNSV IKKYVSYKHG LLEFFEHFQR 480 LLDDRRYDES VADFKGNQST PAMTFPCRIL QHAASVYTHE VYEKFKEELC KGIDCKWEVD 540 GELGNQMIYR VTPHGKTSHH LVTYDSSTNS ICCSCKKFEF AGFLCSHALK ILMTLNIVTI 600 PDAYILKRWT KAAKTGNVHV SSESSPEMGL KAKLSFRYKE LSYLYMQLMT KASECDEAYQ 660 IAKDGFWKMS EQMDACCQGK KKMKEVRIEE NCSAYQDVDT NPSEVAYNKI KGIKVKEKVT 720 YKSSKRPRSA LEMTTKKRKY KVKEKSSSKK LQEFGNNVVH SSMDSATIQG FVRELPPQQA 780 QELGNNDDSD QQVAKHE

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MENDLPTHEV QSCRKLDFED VDLQEINDNA LPLCITDGNQ GNQIFLPLAI PDDLIPKLDM  60
EFDTEVAAKN FYQKYAKASG FGTRLSKGHK DKNSDLMLDR VFCCSREGKK PKDKRNMIVK  120
CPRPETRCDC SARMKISCRK GGKYRVVQFV AEHNHELSTP SKTHLFRSHR HLTMAHEAEI  180
DMARSCGITP KQSIELMSKQ VGGRENLGFI RDDLKNYLRS KRSIPMMQGD TGGVLEYLQG  240
MQLEDPNFFY AIQVDEDDLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGRPIALFV  300
GVNHHKQTTV FGAALLYDET ILTFEWLFDT FAKAMMEKIP RTILTDQDGR MATALASQWP  360
TTYHRLCIWH IYQNAATHLA DVFKDFQNFA ADFSHCIYDY ENEDDFFEGW SEMLKTYGLE  420
DNKWLKKMFD IKEKWALVYG RETFCADMTT TQRSESMNSV IKKYVSYKHG LLEFFEHFQR  480
LLDDRRYDES VADFKGNQST PAMTFPCRIL QHAASVYTHE VYEKFKEELC KGIDCKWEVD  540
GELGNQMIYR VTPHGKTSHH LVTYDSSTNS ICCSCKKFEF AGFLCSHALK ILMTLNIVTI  600
PDAYILKRWT KAAKTGNVHV SSESSPEMGL KAKLSFRYKE LSYLYMQLMT KASECDEAYQ  660
IAKDGFWKMS EQMDACCQGK KKMKEVRIEE NCSAYQDVDT NPSEVAYNKI KGIKVKEKVT  720
YKSSKRPRSA LEMTTKKRKY KVKEKSSSKK LQEFGNNVVH SSMDSATIQG FVRELPPQQA  780
QELGNNDDSD QQVAKHE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-137	FAR1 family protein