PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072256.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 785aa MW: 86015.6 Da PI: 9.6474

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072256.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31	5.7e-10	30	76	4	41
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg.........kgRtlkqck 41 W t+Ed+llv+av+++G+++W+++a +++ + +t+ +c+ XP_027072256.1 30 WGTWEDLLLVCAVNRYGTNSWESVALEIQkrstspflsLSLTPRNCQ 76 *****************************655555555555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence
MAGPNGATGD CGNKSEAPAE RLDSDDAAHW GTWEDLLLVC AVNRYGTNSW ESVALEIQKR 60 STSPFLSLSL TPRNCQMKYL DLTRRFLLKH DPRNTDNDYK DDDVEAADHD GSIISTNGSV 120 PLLEELRKLR VAELRRELER YDLSIVTLQS KVKKMKEERE RCSTESEIRE EKASVLRKSE 180 EAEAPPERDA SEDKVKVIMD ELEKSPSSMA NKKDEQSVNG SVPKDGRVGD IEAGRDEVKV 240 KEPGRIGEGN EEPVRTMEDK LVKEEDSGYG SSDSVEREYR KPGPESVPNE VKVEPESVSH 300 SPELVESVAE SKDGGGGGVC GDEEATTKEC NSDVQSSATK SRRDGENDDV LPGSTKNLDL 360 QNDNRSPSVK LEASVESQPL IDFLDHVKGH KLGSLFLRRL DSQEAPNYKS LIRQHVDLET 420 VQRRVKEGIY SESNLKFFRD LLLLVNNAMV FFGKNTPEFL AAMELRHLIA NEMARRNAKS 480 SGSSSEKQAS LQKASLPDKG SSEPSESLLR KPKLGGQLIV CRKRSSIAAK ASASSSASDK 540 KRDQNKMPTE DSAGLDSKHP SRRQLPARAE EPRITKKRSA DRFASVSTSL KKNAKKGTGT 600 NSKQMSGTNL EKNKGKGGSS SQQPDPRCES KNNQSSADLK KRSAANFLNR MKQSSSSNNS 660 TLLDALKGSP LTASNNSRGG SELKKNENSK ASGGSNLKKN EHGKGSGGSE HKKNENVKWS 720 GKKAQVSTRS SDAKQAKEKS IPATKSLGRP LNKGAAPPTP SGKRGRDDRE SESTASKQQR 780 KKPRK

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence

MAGPNGATGD CGNKSEAPAE RLDSDDAAHW GTWEDLLLVC AVNRYGTNSW ESVALEIQKR  60
STSPFLSLSL TPRNCQMKYL DLTRRFLLKH DPRNTDNDYK DDDVEAADHD GSIISTNGSV  120
PLLEELRKLR VAELRRELER YDLSIVTLQS KVKKMKEERE RCSTESEIRE EKASVLRKSE  180
EAEAPPERDA SEDKVKVIMD ELEKSPSSMA NKKDEQSVNG SVPKDGRVGD IEAGRDEVKV  240
KEPGRIGEGN EEPVRTMEDK LVKEEDSGYG SSDSVEREYR KPGPESVPNE VKVEPESVSH  300
SPELVESVAE SKDGGGGGVC GDEEATTKEC NSDVQSSATK SRRDGENDDV LPGSTKNLDL  360
QNDNRSPSVK LEASVESQPL IDFLDHVKGH KLGSLFLRRL DSQEAPNYKS LIRQHVDLET  420
VQRRVKEGIY SESNLKFFRD LLLLVNNAMV FFGKNTPEFL AAMELRHLIA NEMARRNAKS  480
SGSSSEKQAS LQKASLPDKG SSEPSESLLR KPKLGGQLIV CRKRSSIAAK ASASSSASDK  540
KRDQNKMPTE DSAGLDSKHP SRRQLPARAE EPRITKKRSA DRFASVSTSL KKNAKKGTGT  600
NSKQMSGTNL EKNKGKGGSS SQQPDPRCES KNNQSSADLK KRSAANFLNR MKQSSSSNNS  660
TLLDALKGSP LTASNNSRGG SELKKNENSK ASGGSNLKKN EHGKGSGGSE HKKNENVKWS  720
GKKAQVSTRS SDAKQAKEKS IPATKSLGRP LNKGAAPPTP SGKRGRDDRE SESTASKQQR  780
KKPRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	1e-59	MYB_related family protein