PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072432.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 463aa MW: 48017.5 Da PI: 6.9663

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072432.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.5e-12	247	292	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_027072432.1 247 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 292 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MQPGSSSSRE MQAMNSLLNQ QLHDLQNGQQ HHHHHFDSTT SSHDDFLEQM LSSISTSSWP 60 APDLIKTQPP WDPLSSAAAS QTPLGSLEDQ SVLLASKLRQ HQIGGAKALM LHQQLMLPRG 120 LAGNGLRSPP GPNGGLLAMP LNLAGNGDQN EVIVDGSPFK SANPGNDASV QALYNGFTGS 180 LGQPSTQPQH FHHPQGGAMQ AQNFGAQAMN QAAASGSMGT AGGGGMVAAQ PRQQRVRARR 240 GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM 300 SRLGGAVAPL VADMSSEGGG DCGNGRSSNG TQTASSSNNN NNDSMTVTEH QVAKLMEEDM 360 GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPMHPGLNG NGANNPLLGL GGGANGNGVG 420 EAGGPSSPSM SVLTVQSATM VNGGGGPGGE PSSVKDAASV SKP

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MQPGSSSSRE MQAMNSLLNQ QLHDLQNGQQ HHHHHFDSTT SSHDDFLEQM LSSISTSSWP  60
APDLIKTQPP WDPLSSAAAS QTPLGSLEDQ SVLLASKLRQ HQIGGAKALM LHQQLMLPRG  120
LAGNGLRSPP GPNGGLLAMP LNLAGNGDQN EVIVDGSPFK SANPGNDASV QALYNGFTGS  180
LGQPSTQPQH FHHPQGGAMQ AQNFGAQAMN QAAASGSMGT AGGGGMVAAQ PRQQRVRARR  240
GQATDPHSIA ERLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM  300
SRLGGAVAPL VADMSSEGGG DCGNGRSSNG TQTASSSNNN NNDSMTVTEH QVAKLMEEDM  360
GSAMQYLQGK GLCLMPISLA TAISTATCHS RNPMHPGLNG NGANNPLLGL GGGANGNGVG  420
EAGGPSSPSM SVLTVQSATM VNGGGGPGGE PSSVKDAASV SKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	252	257	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-58	bHLH family protein