PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072953.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 287aa MW: 31776 Da PI: 8.5037

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072953.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	225	247	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ ++L++H + H XP_027072953.1 225 QCPQCNLRFSSVMDLVNHVERvH 247 7*****************99888 PP
2	zf-C2H2	17.7	9.9e-06	259	281	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H XP_027072953.1 259 VCPKCSKGFRDPVSLVEHVEReH 281 7*****************99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MGTPAFPNLG KHCSVEDCRL IDFLPFTCDS CHQVFCLEHR SYGRHHCPKA NKSDVTVVVC 60 PLCAKGVRLI PDENPNITWE SHVNIECDPS NYDKVTKKRK CPVSGCREIL SFSNKIRCKD 120 CTIEHCLKHR FGPDHRCPGP KKIESTFQFS SFLSSGKQQS KQNPVSSSSS WASSLFRVAS 180 SVRATAESGV ARLSSDFKDI LQGSGSSSGS SSMSHGGSTS RQLEQCPQCN LRFSSVMDLV 240 NHVERVHERN GVMKVTLDVC PKCSKGFRDP VSLVEHVERE HRGTSKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-111	C2H2 family protein