PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073039.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 240aa MW: 27232.2 Da PI: 8.714

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073039.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	85.2	3.8e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien rqvtfskRr+g+lKKA+EL +LCdaev vi+fsstgklye++s XP_027073039.1 9 KKIENVNSRQVTFSKRRAGLLKKAKELAILCDAEVGVIVFSSTGKLYEFAS 59 68***********************************************86 PP
2	K-box	62.5	1.6e-21	81	170	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 e++++++ q +++ Lk+ei +Lq qR++ G++L+ L+++eLq+Le+qL++++ ++++K+++lleq+e++ k +++ en+aLr+++ee XP_027073039.1 81 MENKTENEPQPQADALKSEIAKLQLVQRQMTGKELGGLNFQELQHLEHQLHEGILAVKDRKEQVLLEQLEKS--KLQKVVLENEALREQVEE 170 455666677899*********************************************************975..667788889999999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MGRGKIEIKK IENVNSRQVT FSKRRAGLLK KAKELAILCD AEVGVIVFSS TGKLYEFAST 60 RMEQILARYN TNPESSKLIT MENKTENEPQ PQADALKSEI AKLQLVQRQM TGKELGGLNF 120 QELQHLEHQL HEGILAVKDR KEQVLLEQLE KSKLQKVVLE NEALREQVEE YRLRLYRENG 180 QLGRKNSGVC SSTVCDCRSE KDGNSDTSLR LGLSVDICHK RKKPKTESTS NDSETLMVLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57390.1	3e-46	MIKC_MADS family protein