PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073264.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 219aa    MW: 25627.2 Da    PI: 10.0632
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.93.1e-291059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ien++nrqvt+skRrngi+KKA+ELSvLCda+v++i++s t k++ey s
  XP_027073264.1 10 KIENSTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMLSDTKKFHEYTS 59
                    69**********************************************75 PP
2K-box81.81.5e-2771167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq++ g++l+++++e++q++l++Lk+ +++L+r +R+++GedL++L+  ++ +L++++ +sl  iR +K++++++q+++ +kk ++l+e++ +L 
  XP_027073264.1  71 YQSAVGVDLWSTHYEKMQENLRRLKETNNKLRRDIRQRMGEDLNDLNWDNMCRLQEKIVDSLAIIRHRKYHVIKNQTDTYKKKVRNLKERHGNLL 165
                     78889999***********************************************************************************9997 PP

           K-box  96 kk 97 
                       
  XP_027073264.1 166 YD 167
                     65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MGRGKIEIRK IENSTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMLSD TKKFHEYTSP  60
SITTKKVMDD YQSAVGVDLW STHYEKMQEN LRRLKETNNK LRRDIRQRMG EDLNDLNWDN  120
MCRLQEKIVD SLAIIRHRKY HVIKNQTDTY KKKVRNLKER HGNLLYDLEA RSCEDPKYGI  180
VDNARDYNSA LALADGGLSN LYALRLQSSH PNLQDLRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-75MIKC_MADS family protein