PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073756.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 307aa    MW: 35413.8 Da    PI: 9.8743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073756.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.4e-1747137199
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+      +s++l++p  f++++ g++    k ++l+  +g+ W+v +  + +++++++++GW+ F++ + Lk g+f+vF++dg+s f  +v
  XP_027073756.1  47 FFKVF--LPDVSSQQLRVPPLFVKKFsGLV---CKRIKLRCIDGKIWDVDV--EETQEGVFMKNGWQAFADHHLLKLGEFLVFRYDGNSVF--TV 132
                     78888..44555566***********7777...357***************..**********************************9***..** PP

                     EEE-S CS
              B3  95 kvfrk 99 
                     k+fr+
  XP_027073756.1 133 KIFRT 137
                     **996 PP
2B341.23e-132223061098
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++ + l+l+k f++++++k   +  ++l +e+ ++W vk+++ + ++   +++GW  F k+ng++egD + + +d+  +++ +++v++
  XP_027073756.1 222 RTQMHKLMLSKGFISKNNIK--LGSNVMLCNEKEEKWPVKFTHFRDGR-ACIGTGWMAFWKDNGMCEGDKFKLVFDE-GRGRKMITVCK 306
                     556688***********877..5568***************8766664.56899***************97777664.66666888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MCQYHLQLSK VSWFHRREKM VKPGRGRPRK DSSSSSYLSF MDARPEFFKV FLPDVSSQQL  60
RVPPLFVKKF SGLVCKRIKL RCIDGKIWDV DVEETQEGVF MKNGWQAFAD HHLLKLGEFL  120
VFRYDGNSVF TVKIFRTHGC KEEAFVREKI AADVKIEPLE DQIAATEHTC AKHSCNSDGE  180
GNKLDTSRGV REGKQQMSSR FHSQTVQTER DSEFGSIRSI SRTQMHKLML SKGFISKNNI  240
KLGSNVMLCN EKEEKWPVKF THFRDGRACI GTGWMAFWKD NGMCEGDKFK LVFDEGRGRK  300
MITVCKV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-27B3 family protein