PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073822.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 319aa    MW: 38012.1 Da    PI: 9.5461
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.18.7e-1511101194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+k l+ +d +++  +++p +f++++  +++++++++   +++  +sW v++  rkk++  y+ +  W +Fvk+++Lk gD ++F+l+g+++f  
  XP_027073822.1  11 FIKLLM-EDDFTRE-IRIPCSFVRNFkeKLPSRCTIESEAKNSVRNSWPVRI--RKKGRYyYICRHSWPKFVKDHHLKLGDYLLFHLIGKTTF-- 99 
                     566664.4555555.8*******9888888888888888888888*******..88888778889***********************97777.. PP

                     EE CS
              B3  93 vv 94 
                     +v
  XP_027073822.1 100 RV 101
                     44 PP
2B342.51.2e-132293081298
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                       +rl +p+ f ++ +++ke+  + +l  e+ r+W vk+    +s+   ++kGW eF ka +L+ g+++ F+l +r  +  +++++ r
  XP_027073822.1 229 HMRRLNIPRAFSRATKLEKEK--EAVLHGEDQREWPVKI--AERSE---IGKGWTEFRKAYKLEIGEICQFTLLKRfGDL-FHIQIKR 308
                     457899******999999655..8***************..66664...8**********************99985554.6777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MEQNYNFNPS FIKLLMEDDF TREIRIPCSF VRNFKEKLPS RCTIESEAKN SVRNSWPVRI  60
RKKGRYYYIC RHSWPKFVKD HHLKLGDYLL FHLIGKTTFR VKPYGADCCP KKFNVYNSSC  120
SSSDDESDDG SDESFDDSDE TEFYRDDGIR PSKVHPAKKK VYTKYQIDRD NFRSNKFKKL  180
RKTRKSGVGK QVLEIESEEG EDVETNERDG YFHLNAENPY FILRLKRHHM RRLNIPRAFS  240
RATKLEKEKE AVLHGEDQRE WPVKIAERSE IGKGWTEFRK AYKLEIGEIC QFTLLKRFGD  300
LFHIQIKRTS NKICKEEWA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16210.15e-11B3 family protein