PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074162.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 261aa MW: 29520.4 Da PI: 9.0927

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074162.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.4e-13	197	221	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ktelC+ +++tG C++ ++C+FaHg XP_027074162.1 197 KTELCNKWQETGSCPFAGNCRFAHG 221 9***********************8 PP
2	zf-CCCH	21.6	3.8e-07	234	259	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_027074162.1 234 YKTEVCRMVLAGDICPYGHRCHFRHS 259 9********55********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence
MTDEVVTPDR CHSDSSLILE YQQLYNRYAF CLANLRESIK EVQALGQDNE SLRLANADLV 60 HRLSLLSRAT IHNCLLSDFN RLRISGNDTP SPRLYSREAS PAPGPDVIQQ NRFQRRHLAE 120 RVSLPKSISI RSAGYLKFKP KSAGKYEAPT TQASSPNRVN SPPLPDSEKA RQRVYVAGGG 180 REEEASQFEV YNQGMSKTEL CNKWQETGSC PFAGNCRFAH GIMELRPVIR HPRYKTEVCR 240 MVLAGDICPY GHRCHFRHSL S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-64	C3H family protein