PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074400.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 252aa    MW: 27806.2 Da    PI: 7.9279
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.82e-3150103357
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                     k rY+eClkNhA+ +GghavDGCgEf+++ g+egt +alkCaAC+CHRnFHR+e 
  XP_027074400.1  50 KPRYRECLKNHAVGIGGHAVDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKEA 103
                     779*************************9.999********************96 PP
2Homeobox16.31.7e-05190245152
                     TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrR 52 
                     +r Rt+f++eq e + +l e    k ++ ++e  ++L ++lg++ ++ kvW +N +
  XP_027074400.1 190 KRFRTKFSQEQKEKMSDLAEklgwKIQKQDEEVVQQLCNELGIKRQVLKVWMHNNK 245
                     789************99999776678999*************************87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    
MEFEDQEENE GVEMELGPSY DSLGNSNSTR VSNKVPSPVE MSAEPTSQRK PRYRECLKNH  60
AVGIGGHAVD GCGEFLAAGA EGTLDALKCA ACNCHRNFHR KEALPGLPPH DPFHLYHHHY  120
HQQPPPPPPQ LLTYRTPSGY LHVSPPQQNR PLALPSISGG GEHEDMSNMN TSGGGRSGGG  180
GGGFVGSSKK RFRTKFSQEQ KEKMSDLAEK LGWKIQKQDE EVVQQLCNEL GIKRQVLKVW  240
MHNNKHTLGK KP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173182GGGRSGGGGG
2174183GGGRSGGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-60ZF-HD family protein