PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074580.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family M-type_MADS
Protein Properties Length: 164aa    MW: 17979.2 Da    PI: 5.4759
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074580.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.99.5e-171964146
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    k+ienk   q tfskRr+ ++ KA ELS  C+a+vavi+ s+ g++
  XP_027074580.1 19 KKIENKNYLQATFSKRRTSLFRKAAELSATCGADVAVIVQSPGGNV 64
                    68****************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MEATVKRKGG SGRKKIEIKK IENKNYLQAT FSKRRTSLFR KAAELSATCG ADVAVIVQSP  60
GGNVFAAGGR SSVATIFPQA DGGGQERDQD EEQYAQILKE IEAEKIKEKS LMESQGGEGF  120
WWERGFDDLD VNELEEYVAA METLRKNVSA KAEEKAKANN IAAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-16M-type_MADS family protein