PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074724.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 243aa MW: 27561.7 Da PI: 8.8298

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074724.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q+G+g +W + ++++g++R++k+c++rw++yl XP_027074724.1 14 RGPWSPEEDAKLKAYIEQYGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	38.5	2.7e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_027074724.1 69 GGFSEEEDSIICSLYMNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDAKLKAYIE QYGTGGNWIA LPQKIGLRRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDSIIC SLYMNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLXK 120 QRKDQRTRQX SSLRQEMNRK KENFMTTEAI HVLHSLISCS NHWPFLQFIP PAQQAHDVED 180 QAVIIAGKLS ADDQQANGNS FNNHNSLYSC DISFGEGQAC ENPLSMASCS QQCSPSSYYP 240 IHG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	4e-75	MYB family protein