PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074837.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 246aa MW: 28045.3 Da PI: 10.5956

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	91.3	4.7e-29	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+ XP_027074837.1 9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYST 59 79***********************************************96 PP
2	K-box	97	2.9e-32	87	174	13	100
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ +++ e+ kL ++ie Lqr+++h++GedL+sLsl+eLq LeqqL+ +l++iR++Kn++++e+i el+kkek lqe+n L k+++e XP_027074837.1 87 QQDNWSLEHPKLVSRIELLQRNIKHYVGEDLDSLSLRELQTLEQQLDAALRRIRTRKNQVMHESIAELRKKEKTLQEQNSLLAKQIKE 174 6789*********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD AEVALIVFST KGKLFEYSTE 60 SSMERILERY ERYSYAEKRL SGSGPGQQDN WSLEHPKLVS RIELLQRNIK HYVGEDLDSL 120 SLRELQTLEQ QLDAALRRIR TRKNQVMHES IAELRKKEKT LQEQNSLLAK QIKENDKIVM 180 ERLHLIQRSS ALVLSEPAPG SVPVPSLAAG GPFQVRGPTG EEDGRRGKNT LMPPPPPPPW 240 LVRRMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	2e-90	MIKC_MADS family protein