PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074840.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 360aa MW: 39581.2 Da PI: 4.4743

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074840.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.7	4.8e-19	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k XP_027074840.1 58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111 566899***********************************************9 PP
2	HD-ZIP_I/II	130.9	5.1e-42	57	149	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ e+L++++e+L +e++e XP_027074840.1 57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTLKHNYENLQHDNEALIKEIRE 149 69**************************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MKRLGSSDSL GALMSICPTS TDEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHVPEKKR 60 RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120 VLKANYDTLK HNYENLQHDN EALIKEIREL KSKLQDDKSE GKVLVKEEVM VSESDDDKAI 180 DHQAKTSTDD VLAECDEDDD ANELNFVESF SSSNGVMNGA SIFTDFKDGS CDSDSSAILN 240 EENLNNSSSS PNAAISSSGG GVVLQTVPHQ FLISNGGGGG GVGGSSSTTI SNGFQFGHDS 300 KAAILGEAHK SSSAAAAAAY QPQFVKIEEH NFFSGDDSCS TFFSDDQPPT LHWYCPEEWN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MKRLGSSDSL GALMSICPTS TDEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHVPEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYDTLK HNYENLQHDN EALIKEIREL KSKLQDDKSE GKVLVKEEVM VSESDDDKAI  180
DHQAKTSTDD VLAECDEDDD ANELNFVESF SSSNGVMNGA SIFTDFKDGS CDSDSSAILN  240
EENLNNSSSS PNAAISSSGG GVVLQTVPHQ FLISNGGGGG GVGGSSSTTI SNGFQFGHDS  300
KAAILGEAHK SSSAAAAAAY QPQFVKIEEH NFFSGDDSCS TFFSDDQPPT LHWYCPEEWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	58	87	KKRRLSVDQVKALEKNFEVENKLEPERKVK
2	106	114	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	3e-67	HD-ZIP family protein