PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075130.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 492aa    MW: 56538.6 Da    PI: 8.8936
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-1425991598
                    -EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     + +p +f+ ++ ggk  ++ + +l+    ++W+v++    +++  +l++GW+ F+ +n+L++gDfvvF+++g++ f   v vf+
  XP_027075130.1 25 GVKIPASFL-NYlGGKI-SENQAVLRRGGVKEWRVEI----SDQ--WLREGWRAFAVENNLQVGDFVVFEHEGNMVF--EVLVFD 99
                    5789*****.6655553.445799999999*******....443..5*************************99999..777776 PP
2B354.52.2e-171642401089
                     HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +l  +rl +p++fa e+g+   ++  ++l+d+s rsW++k+  + +s+   ++ GWk+F+ka+gLkegD +v++l+++ e
  XP_027075130.1 164 NLLYHRLNIPRDFAMENGLF-GRECNIKLRDQSQRSWSLKI--KSSSDCASIQCGWKSFAKAQGLKEGDEFVLELTENGE 240
                     455689***********554.33458***************..8888889************************987533 PP
3B357.23.1e-18275363496
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++ ++  +++ l+lp kfa+++++++ +s +l+l+d++ rsW  +l  + +++r+ ++ G  eF  an+LkegD++ F+l++ +++++v+ +
  XP_027075130.1 275 STIEPHCIRRCVLYLPMKFARSNDLSN-RSCKLILKDPKKRSWHAEL--NSRGSRVCISFGLDEFFTANDLKEGDTCSFELVE-NGETPVINF 363
                     566789999**************9885.677****************..999999*************************998.566677765 PP
4B3573.5e-18386474395
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       ++++++ k++ l lp kfa+ +g+ k ++ +++++d + r W++kl  + +++r+vl++GW++  +angLk+gD   F+ ++ +++++vv 
  XP_027075130.1 386 VSTIKPYNIKRCVLHLPVKFAKPNGLTKLKG-EMIVKDDRQRLWKIKL--KDRGDRVVLSSGWSKLSRANGLKVGDRYKFEIIK-KGKRPVVN 474
                     567799******************9998776.9***************..9999***************************998.77778886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MSMRTRIQPE KPHFFKPILP GFIDGVKIPA SFLNYLGGKI SENQAVLRRG GVKEWRVEIS  60
DQWLREGWRA FAVENNLQVG DFVVFEHEGN MVFEVLVFDP SHCERKYASI DDEKKCSQKF  120
KAAATEEIPR SKKVKLELSD DQEEPDSTDQ ICRPYFIFTV KPINLLYHRL NIPRDFAMEN  180
GLFGRECNIK LRDQSQRSWS LKIKSSSDCA SIQCGWKSFA KAQGLKEGDE FVLELTENGE  240
APAFNFYGKD KASTRKSGKE VSWRDEEPVN PHFTSTIEPH CIRRCVLYLP MKFARSNDLS  300
NRSCKLILKD PKKRSWHAEL NSRGSRVCIS FGLDEFFTAN DLKEGDTCSF ELVENGETPV  360
INFLTHLTKD DQPPPQPATD NHSYFVSTIK PYNIKRCVLH LPVKFAKPNG LTKLKGEMIV  420
KDDRQRLWKI KLKDRGDRVV LSSGWSKLSR ANGLKVGDRY KFEIIKKGKR PVVNFHCEFL  480
KSEEDSPTLT PD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-55B3 family protein