PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075278.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26258.6 Da    PI: 5.8042
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.8e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl+eyss
  XP_027075278.1 10 KIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALILFSSTGKLFEYSS 59
                    69**********************************************96 PP
2K-box48.92.8e-179317320100
           K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     + ++L ke+ +  +++R++ Ge+L+ L++ +LqqLe+ Le +l+++ +kK e ++++i++lq+k  +l een++L+++++e
  XP_027075278.1  93 NCSRLSKEVAEKSHQLRQMRGEELQGLTVDDLQQLERSLEAGLNRVIEKKGEKIMKEINHLQRKGMQLMEENERLKQQVME 173
                     67889999999999****************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MAREKIQIRK IDNATARQVT FSKRRRGLFK KAEELSVLCD ADVALILFSS TGKLFEYSSS  60
SMKEILERHN LHSKNLEKME QPSLELQLVE NSNCSRLSKE VAEKSHQLRQ MRGEELQGLT  120
VDDLQQLERS LEAGLNRVIE KKGEKIMKEI NHLQRKGMQL MEENERLKQQ VMEVSNGSGQ  180
MAADDSENVL YEEGQSSESV TNVCSSTGGP QDYESSDTSL KLGLPYSGRS EK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-113MIKC_MADS family protein