PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075542.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HD-ZIP

Protein Properties

Length: 279aa MW: 30984 Da PI: 8.2816

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075542.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	134	188	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l+L rqV vWFqNrRa+ k XP_027075542.1 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTK 188 678899***********************************************98 PP
2	HD-ZIP_I/II	122.6	1.9e-39	134	223	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+k q++lLEesF+++++L+p++K++lareL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l XP_027075542.1 134 RKKLRLTKVQSALLEESFKQHSTLNPKQKQDLARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 223 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MGLDDVCSPG LVLGLGFPST AENKPLKTDN QKSRKPSLLK SEQLANFEPS LTLSLSGGDT 60 FDMLVKKLDA TANKASNNEP PPSAADLHRQ DSAASSFSNN SVKRERELGS SEEVEIERLS 120 SRVSDEDDDG SNGRKKLRLT KVQSALLEES FKQHSTLNPK QKQDLARELN LRPRQVEVWF 180 QNRRARTKLK QTEVDCEFLK KCCETLTDEN RRLQKELQEL KALKLAQPLY MQLPAATLTM 240 CPSCERVGGV GENSSSKSPF SMAPKPHFFN PFTNPSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	191	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	6e-86	HD-ZIP family protein