PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075650.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 204aa MW: 23678.9 Da PI: 8.059

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075650.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.9	1.3e-09	30	76	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT eE++l+ +a + + + +++Ia +++ g+t +q+k ++q + XP_027075650.1 30 EWTFEEEKLFENALAVYDLNswdLFEKIAIKVP-GKTIEQIKQHFQLL 76 7*****************6666689**.*********965 PP
2	Myb_DNA-binding	32.2	2.4e-10	122	151	3	32
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg 32 rWT+eE+e ++ + k++G+g+W++I+r XP_027075650.1 122 RWTKEEHENFLLGLKKYGKGDWRSISRNSD 151 9*************************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence
MELSNLSCYP FNEDAISSFT CSPVRSKDSE WTFEEEKLFE NALAVYDLNS WDLFEKIAIK 60 VPGKTIEQIK QHFQLLVEDV NFIETWSGPL PNCRTTNNVE PESTPNSTLT SVENRQKKKG 120 TRWTKEEHEN FLLGLKKYGK GDWRSISRNS DVPSLILEKH IKAFIFVITK TPRQVASHGQ 180 KYFKNNPTPF YKRSTYVIIA FMID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-38	MYB family protein