PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075722.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26221.6 Da    PI: 5.1542
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075722.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.66e-221049241
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                    ri n++nrqvtfskRrngilKKA+EL vLCd+++a+ +++
  XP_027075722.1 10 RIVNNTNRQVTFSKRRNGILKKAYELAVLCDIDIALFMLG 49
                    899*********************************9987 PP
2K-box19.83.3e-0867148990
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 
                     + +a++++++qe+ +L+ ++e  ++++R l  +  +  sl e+++ e++L ++l+ + ++K +ll+++ +  q+  +++++ 
  XP_027075722.1  67 VLSAQSQEYKQEIMNLQHQLEIAKEQLRLLEPDPQKFTSLGEIESSEERLSEALNLVEKRKRHLLTDHSSSYQETVEQINSV 148
                     567889****************************9***********************************999988887665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    
MGRVKLPISR IVNNTNRQVT FSKRRNGILK KAYELAVLCD IDIALFMLGW YCLIILMSVL  60
SWISSEVLSA QSQEYKQEIM NLQHQLEIAK EQLRLLEPDP QKFTSLGEIE SSEERLSEAL  120
NLVEKRKRHL LTDHSSSYQE TVEQINSVVQ YIINAQVEGN RSLENSEFSS WLDQHGHKTD  180
ANGSNCVSVG PDENGISSTS AISMTPPSQH SKFASTCQPL RSEEAANYET ME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-35MIKC_MADS family protein