PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075728.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 343aa MW: 39124.5 Da PI: 4.7647

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.9	2.3e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l+ + G +W+ +++ g+ R++k+c++rw +yl XP_027075728.1 14 RGPWSADEDMKLISFILTNGQCCWRDVPKLAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	52.8	8.9e-17	70	111	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +d++ qlG++ W++Ia++++ gRt++++k++w+++ XP_027075728.1 70 LSEHEEKMVIDLHSQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 5899*************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MGRRPCCDKV GLTRGPWSAD EDMKLISFIL TNGQCCWRDV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLMNMG 120 IDPVTHKPLP QSTSSTEQPQ EEQPKNHPDS DQEPKKEPAS SVSINDIISE MDEQKREAET 180 SMQSTLTDAI QEEEDKSISI PQCQIDSSSV EFNNVFSIDE VPMIEPDEIF IPFARASSTL 240 SSTSSSSCSS FDRNSSNCNV FGHHQEFFPT INHSQSSFDH YPTDKMIVDF WDDDFISNLD 300 KLTNDDSDRN NLAAVIGLEP SPAQYHVEMV LLDEDYSWKF DHF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MGRRPCCDKV GLTRGPWSAD EDMKLISFIL TNGQCCWRDV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEHEEKMVID LHSQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLMNMG  120
IDPVTHKPLP QSTSSTEQPQ EEQPKNHPDS DQEPKKEPAS SVSINDIISE MDEQKREAET  180
SMQSTLTDAI QEEEDKSISI PQCQIDSSSV EFNNVFSIDE VPMIEPDEIF IPFARASSTL  240
SSTSSSSCSS FDRNSSNCNV FGHHQEFFPT INHSQSSFDH YPTDKMIVDF WDDDFISNLD  300
KLTNDDSDRN NLAAVIGLEP SPAQYHVEMV LLDEDYSWKF DHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66230.1	1e-86	MYB family protein