PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075779.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 489aa    MW: 55242.8 Da    PI: 4.5309
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075779.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.68.1e-751144732373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                     ++lLl  Aea+++g+ + a+ +  rl+++ s +    +p+ Rla yft++L  + +   +el    p  +   + ++++++a+++++e+sP++kf
  XP_027075779.1 114 TDLLLMGAEAIEAGNVRFASLVALRLKDILSDQEngdNPLDRLALYFTQGLLDKSLT-APEL----PEDPV--SPQTNAISAFQMLQELSPYVKF 201
                     689999*********************99555442257************9877666.2333....33333..337789**************** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +h+taNqaIlea+eg++++H+iDfd+++G+QWp+L+  La+R++   slRiT+++  ++ s+ ++++tg rL++fA++++++f+f+ +++++ ed
  XP_027075779.1 202 AHFTANQAILEATEGHQEIHVIDFDVMEGIQWPSLMVDLAAREDA--SLRITAIAG-DKRSSCNIQQTGFRLQDFANSINLSFSFDQVLVTKEED 293
                     ******************************************765..9*******9.67899*************************86665555 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres 279
                     +  ee+  k g +l+ n++++  +++ ++ sl +   ++ + +++lsPk++v+v++e    ++  s+sF+e f+eal++y+al dsl +++ +  
  XP_027075779.1 294 F--EEI--KVGHTLIANCMINQLHMPYRESSLVK---TFFNGLRKLSPKILVLVQEElfsfSKAPSTSFAEFFCEALDHYTALSDSLRSGFCAGY 381
                     5..777..5699**************99999999...********************7664455777********************66665555 PP

            GRAS 280 .eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       + + +E+e+l+ +i + v +     ++ +e  +   +  ++ GF+p+p s+ +++qak+l++ ++  gy v++e+  l+l+Wk+rpL+++S W
  XP_027075779.1 382 kLALKIIEKEFLRMRILDSVKHFPCG-IMGNE-SNMLPDYPSMNGFRPIPTSSCNVTQAKHLISLFN-GGYWVQNEQCKLTLCWKSRPLTTASIW 473
                     3888999*************998887.44444.45556777899***********************.89************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    
MEFEKMYFDV EPSYIIDHHC SLETALTFQN NHLIPPYSFQ DYVSNDIVST ENFLEMETDI  60
KDFEAKNCAL DHENVVHKRL LPCQEIQETM DILAAEQSHL KDIQDELMEE SSLTDLLLMG  120
AEAIEAGNVR FASLVALRLK DILSDQENGD NPLDRLALYF TQGLLDKSLT APELPEDPVS  180
PQTNAISAFQ MLQELSPYVK FAHFTANQAI LEATEGHQEI HVIDFDVMEG IQWPSLMVDL  240
AAREDASLRI TAIAGDKRSS CNIQQTGFRL QDFANSINLS FSFDQVLVTK EEDFEEIKVG  300
HTLIANCMIN QLHMPYRESS LVKTFFNGLR KLSPKILVLV QEELFSFSKA PSTSFAEFFC  360
EALDHYTALS DSLRSGFCAG YKLALKIIEK EFLRMRILDS VKHFPCGIMG NESNMLPDYP  420
SMNGFRPIPT SSCNVTQAKH LISLFNGGYW VQNEQCKLTL CWKSRPLTTA SIWVPTASSN  480
TSLARSTSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-56GRAS family protein