PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075780.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 338aa    MW: 37460.7 Da    PI: 5.8658
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS167.79.2e-5264322107373
            GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                     eg++++H+iDfd+++G+QWp+L+  La+R++   slRiT+++  ++ s+ ++++tg rL++fA++++++f+f+ +++++ ed+  ee+  k g +
  XP_027075780.1  64 EGHQEIHVIDFDVMEGIQWPSLMVDLAAREDA--SLRITAIAG-DKRSSCNIQQTGFRLQDFANSINLSFSFDQVLVTKEEDF--EEI--KVGHT 151
                     6889*************************765..9*******9.67899*************************866655555..777..5699* PP

            GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe....adhnsesFlerflealeyysalfdsleaklpres.eerikvErellg 291
                     l+ n++++  +++ ++ sl +   ++ + +++lsPk++v+v++e    ++  s+sF+e f+eal++y+al dsl +++ +    + + +E+e+l+
  XP_027075780.1 152 LIANCMINQLHMPYRESSLVK---TFFNGLRKLSPKILVLVQEElfsfSKAPSTSFAEFFCEALDHYTALSDSLRSGFCAGYkLALKIIEKEFLR 243
                     *************99999999...********************7664455777********************666655553888999****** PP

            GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +i + v +     ++ +e  +   +  ++ GF+p+p s+ +++qak+l++ ++  gy v++e+  l+l+Wk+rpL+++S W
  XP_027075780.1 244 MRILDSVKHFPCG-IMGNE-SNMLPDYPSMNGFRPIPTSSCNVTQAKHLISLFN-GGYWVQNEQCKLTLCWKSRPLTTASIW 322
                     *******998887.44444.45556777899***********************.89************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGAEAIEAGN VRFASLVALR LKDILSDQEN GDNPLDSLPN AAGAVTICEV RAFHSQPGNP  60
GGNEGHQEIH VIDFDVMEGI QWPSLMVDLA AREDASLRIT AIAGDKRSSC NIQQTGFRLQ  120
DFANSINLSF SFDQVLVTKE EDFEEIKVGH TLIANCMINQ LHMPYRESSL VKTFFNGLRK  180
LSPKILVLVQ EELFSFSKAP STSFAEFFCE ALDHYTALSD SLRSGFCAGY KLALKIIEKE  240
FLRMRILDSV KHFPCGIMGN ESNMLPDYPS MNGFRPIPTS SCNVTQAKHL ISLFNGGYWV  300
QNEQCKLTLC WKSRPLTTAS IWVPTASSNT SLARSTSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-34GRAS family protein