PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027075817.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YB

Protein Properties

Length: 252aa MW: 28131.8 Da PI: 6.711

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027075817.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.3	7e-56	78	173	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +eqdrflPianv+rimkkv+P+n+kiskdaketvqecvsefisfvt+easdkcqrekrktingdd++wa++tlGfedyv plk+yl+kyrelege XP_027075817.1 78 KEQDRFLPIANVGRIMKKVIPGNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVTPLKQYLSKYRELEGE 172 89*******************************************************************************************99 PP NF-YB 97 k 97 k XP_027075817.1 173 K 173 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MADERCGIGP NVPIKGSLEN QCSLSSSSNT NNDNNNNNSS SSLSIATVIA TYNHHNNNNS 60 NNNNGSSSSC GNNSNNNKEQ DRFLPIANVG RIMKKVIPGN GKISKDAKET VQECVSEFIS 120 FVTGEASDKC QREKRKTING DDIIWAITTL GFEDYVTPLK QYLSKYRELE GEKLNVPKQQ 180 QQQQQQQQHH QRLQNHDQNP IMSPYHSVYS STNLLSQPPF VPSDQPFALP FSQSSIQTQL 240 PQQEHIDSVG HW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G13570.1	5e-70	NF-YB family protein