PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027075886.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 644aa    MW: 72937.7 Da    PI: 6.8506
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027075886.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.1e-19135190156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r++ + +++eq+++Le++F+++++p++++r++L++++gL+ rq+k+WFqN+R++ k
  XP_027075886.1 135 RKQYHHHSAEQVQRLEAFFKECPHPDENQRRQLSREIGLEPRQIKFWFQNKRTQTK 190
                     6888999*********************************************9988 PP
2START24.46e-09275372388
                     HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
           START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                     a  a++el+ +   +ep+Wvks+         e+ d+ +                 + +e +r+sg+v+ ++   + ++++d+e+W   ++    
  XP_027075886.1 275 AVNAMDELLELFRGNEPLWVKSPtkeryliHRETHDKLY-------PkishinsssSWIESSRDSGLVPITTR-HLIDIFQDPEKWMDFFPtivt 361
                     6789*******************5555555445555555.......244455668899***************.8889999999***99999999 PP

                     EEEEEEEECTT CS
           START  78 kaetlevissg 88 
                     k+ t+ev+++g
  XP_027075886.1 362 KVRTIEVLDTG 372
                     **********9 PP
3START36.99e-13384444147206
                     ESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 147 llpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     ++pSg+li++++ng+ +v wvehv +++ +  h l++ +v  ++a gak+w  tlqr ce+
  XP_027075886.1 384 MFPSGCLIQDMPNGKANVAWVEHVQVDDISLtHPLYKDMVCDSQAYGAKKWIVTLQRMCER 444
                     68**************************8777***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    
MASSLLGWVL GDPCSSEMRS CWAPEPPGSD DGGYGAGAIK CLQCFSDKVL VLDDVRWVDI  60
ISVQPRWMCR GHLHGGLGMK PSSGVVLKTG MSSDEGRDLC SPRRRGAPRN GFALDSNGSA  120
DEHDDSSTSR RKRERKQYHH HSAEQVQRLE AFFKECPHPD ENQRRQLSRE IGLEPRQIKF  180
WFQNKRTQTK SHNERADNNA LRVENNRFYY ETLREALRNL LERASHAVST FSRRSGVLES  240
YLSRENILRT SMNTLLPQRF SEVQGMEKSV MVETAVNAMD ELLELFRGNE PLWVKSPTKE  300
RYLIHRETHD KLYPKISHIN SSSSWIESSR DSGLVPITTR HLIDIFQDPE KWMDFFPTIV  360
TKVRTIEVLD TGKEGWFSIC ETWMFPSGCL IQDMPNGKAN VAWVEHVQVD DISLTHPLYK  420
DMVCDSQAYG AKKWIVTLQR MCERFAFSMG PRSTPRHELE GDGQKLLPHV SMLEKDLPQL  480
SEWNSNGFRV SVHKSDTSGQ PNNMIVCVAA FLQLPTTFEN LFDFFKDEHA RVQPINQKEN  540
MLILQESRID LLGANLIYAP VLVSAITSAT SGKDTRDTDV LPPGFIISSD GVDDSGTLLT  600
VAFQIMVRPD TFADRLVTDS VATIHALISS TVQKIRVAVG FRFG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130137RRKRERKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.12e-78HD-ZIP family protein