PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076485.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NAC
Protein Properties Length: 230aa    MW: 26486 Da    PI: 8.9456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM92.95.1e-2948153128
             NAM  53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +e+ewyfF++rd+++ +g r+nr+tk+g+Wkatg+d+++ s    +++ glkktLvfykgrap+g++tdW+m+eyrl
  XP_027076485.1   4 IGEREWYFFVHRDRRHGHGGRPNRTTKDGFWKATGSDRQIRSLsdPKKVLGLKKTLVFYKGRAPRGSRTDWIMNEYRL 81 
                     5789************************************987667788***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MAKIGEREWY FFVHRDRRHG HGGRPNRTTK DGFWKATGSD RQIRSLSDPK KVLGLKKTLV  60
FYKGRAPRGS RTDWIMNEYR LPDNHHHLPK EDVVLCKIYR KATSLKILEH RAAMEDIISK  120
TVNPTLSSTD QSQEGKIPEE NLGESFSQKQ STINLPMTKQ EDDDLSVPNS SVKFGCLNYN  180
CDLKELQVLD VPKFSMDATT DAFWTQMRSP WLDNWSPSVY ANLLNCSPHC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-56NAC family protein