PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027076550.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 175aa    MW: 20365.4 Da    PI: 8.5115
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027076550.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.5e-1883135456
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     + +++ eq+++Le+ Fe  +++  e++ +LA+ l+L+ rqV +WFqNrRa++k
  XP_027076550.1  83 KKRLNLEQVKVLEKSFELGSKLEPERKMQLARALELQPRQVAIWFQNRRARWK 135
                     4568889*********************************************9 PP
2HD-ZIP_I/II119.51.8e-3881168188
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                     ekk+rl+ eqvk+LE+sFe  +kLeperK++lar+L+lqprqva+WFqnrRAR+ktkq+Ekdye+Lkr+++ lk++ne L+  v+e+ 
  XP_027076550.1  81 EKKKRLNLEQVKVLEKSFELGSKLEPERKMQLARALELQPRQVAIWFQNRRARWKTKQMEKDYEVLKRQVEILKADNELLRMMVSEIL 168
                     69******************************************************************************99887765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MIHGNMETFF PVNSMFQNHQ DHDRLPSSNN PSAPCAAHRD FPAISSALMR RSMLFSGVDM  60
SEEALRLEDD MSDDGAAPLG EKKKRLNLEQ VKVLEKSFEL GSKLEPERKM QLARALELQP  120
RQVAIWFQNR RARWKTKQME KDYEVLKRQV EILKADNELL RMMVSEILKV SELRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-53HD-ZIP family protein