PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076672.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 319aa MW: 35426.9 Da PI: 7.4246

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076672.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136	1.4e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrrkC+++Cv+apyfp +qp+kf nvh++FGasnv kll++l + +reda++sl+yeAe r+rdPvyG+vg+i+ lqq+l+q++++l+ XP_027076672.1 7 PCAACKCLRRKCTQECVFAPYFPPDQPQKFINVHRVFGASNVAKLLNELGTGQREDAVNSLAYEAEYRLRDPVYGCVGLISILQQKLKQVQHDLN 101 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e XP_027076672.1 102 NAKKE 106 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MSSSNSPCAA CKCLRRKCTQ ECVFAPYFPP DQPQKFINVH RVFGASNVAK LLNELGTGQR 60 EDAVNSLAYE AEYRLRDPVY GCVGLISILQ QKLKQVQHDL NNAKKELATY IGPSAMLPIF 120 QHPGFMQQHP NNPSASTVMP YAMQPMMGLP TGVAAPHGGP LIIRDAQQQQ QMYEAQQYAA 180 AVAARDQEMF RAYEQQQQQQ PPPQELMRFN SGFEGAGPAA ATAFNTMSCG AAMSPSLALG 240 SYEAVPYHQI SQQQQQLPPE HSHSHHHHHN QFQLESQLML QQQQPQQLPL QSHHQPQAAQ 300 QQHPQRAKSE EGRSVGPSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-82	LBD family protein