PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027076835.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 215aa MW: 24130.2 Da PI: 8.4635

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027076835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.6e-06	179	206	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 + h +Er+RR+++ + ++ L ++P + XP_027076835.1 179 QDHILAERKRRQKLSKHIAALSAVVPDL 206 67999*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MARSEINHMD LSTEKWLSEI LEMDVPALCY QWPMMNSIDQ SVNEDILFNR FSSSDHESYP 60 IHPSSSIKNK QLHEASQTSG VSLSQPIQLI NNDKDSRLIC TSRKPPSSPS PRIISFGAGT 120 CNYPKHTVKT KSDKMMHLGT AYYSYISPNS FNQEPSEALE YGVSSPFEKG FSGTPVRAQD 180 HILAERKRRQ KLSKHIAALS AVVPDLKKVS EIRSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	190	ERKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	4e-09	bHLH family protein