PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077117.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 351aa MW: 40889.6 Da PI: 8.3397

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.7	4.2e-13	35	115	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +g + +p f++++g++ ++ ++l+ ++g sW ++l ++ +++l kGWk+F++ ++e f+vFk+ g+s+f v +f+ XP_027077117.1 35 DRG-IKIPTAFMRDYGES--LDQVVVLKVPTGASWPIEL--LQTEFGTWLDKGWKDFAEYYSIRECHFLVFKYGGDSQF--QVLIFDP 115 334.89*******966..7889***********..999999*************************99999..9999885 PP
2	B3	52.7	7.6e-17	255	350	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 f++ + ps+v+ s+ l ++ fa+++ +k+ ++ ++ l+ ++g + W v++ + + +++GW+eFv +n+L +gD++vF+l+++ + f + XP_027077117.1 255 FISFMQPSYVTYSCKLFFSLVFAKKY-LKECKHWDMELRVSEGtKIWPVTC--YIYTTKAKIKRGWEEFVLDNNLMVGDVCVFELMKDnRMF--N 344 788899***************999.34456678888886666***..77777778**********************9964555..9 PP EEEE-S CS B3 94 vkvfrk 99 v+++r+ XP_027077117.1 345 VTIYRR 350 999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MATNQRGNKR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLDQVVVLKV 60 PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF KYGGDSQFQV LIFDPSASEI 120 EYRLEAPEDH GKHDHKNQLP MRRRTMFQKS DEVESDDDSF EILGEVSAAA SCHTKQRRKS 180 AQIHEEQDSD SRKNENVEKL EVDVNPPQKM IKKESSEGVP STRQSAIAKS EKVIDKDKFI 240 SYQRAKTFTS ANPFFISFMQ PSYVTYSCKL FFSLVFAKKY LKECKHWDME LRVSEGTKIW 300 PVTCYIYTTK AKIKRGWEEF VLDNNLMVGD VCVFELMKDN RMFNVTIYRR N

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MATNQRGNKR SLDQALNHQA KKPPHFFKVV LSPMDRGIKI PTAFMRDYGE SLDQVVVLKV  60
PTGASWPIEL LQTEFGTWLD KGWKDFAEYY SIRECHFLVF KYGGDSQFQV LIFDPSASEI  120
EYRLEAPEDH GKHDHKNQLP MRRRTMFQKS DEVESDDDSF EILGEVSAAA SCHTKQRRKS  180
AQIHEEQDSD SRKNENVEKL EVDVNPPQKM IKKESSEGVP STRQSAIAKS EKVIDKDKFI  240
SYQRAKTFTS ANPFFISFMQ PSYVTYSCKL FFSLVFAKKY LKECKHWDME LRVSEGTKIW  300
PVTCYIYTTK AKIKRGWEEF VLDNNLMVGD VCVFELMKDN RMFNVTIYRR N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	1e-42	B3 family protein