PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077138.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 475aa MW: 55589.7 Da PI: 8.6841

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077138.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.5e-24	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k+ ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + ++k++v++l+leHnHel XP_027077138.1 26 KFYNKYAFKMGFSVRKDYLNKN-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTKKYRVHDLVLEHNHEL 113 6*****************99.8899************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MDCSKLAEDE TPELGMEFNS EKDAYKFYNK YAFKMGFSVR KDYLNKNKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTKKY RVHDLVLEHN HELHIVQCSH 120 MMPSQRKVSE AQGFQAEISV DAGLSLKQSH ELMGKEAGGM ENVGYTREDL KRYLHTRRER 180 SLKYGEAGIL IDYNFFEDVV TFDTTYKTNK EYRPLGVFVD FNQHRQIVIF GAALMYDETI 240 DSFKWAFGTF LEAMCRKHPS TILTDQDHAI AAAFSVVMPE TFHGLCTFHI RRNFIKYLGN 300 HYKENSDLPY MFGACMYEFE EVEQFNRVWE AMVKKHNLEN NEWLSGLYRI RDKWARCMMK 360 ERWTAGMRST QLSESLNAAI KNHLKLDHDL VQFFRHFNRV VDEKRHNELI VKYEMRQKLP 420 MVGLRQTPML VHASETYSST VFVAFQNEYG ESTAMVILRQ KNAAIFVELA VMRYD

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MDCSKLAEDE TPELGMEFNS EKDAYKFYNK YAFKMGFSVR KDYLNKNKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTKKY RVHDLVLEHN HELHIVQCSH  120
MMPSQRKVSE AQGFQAEISV DAGLSLKQSH ELMGKEAGGM ENVGYTREDL KRYLHTRRER  180
SLKYGEAGIL IDYNFFEDVV TFDTTYKTNK EYRPLGVFVD FNQHRQIVIF GAALMYDETI  240
DSFKWAFGTF LEAMCRKHPS TILTDQDHAI AAAFSVVMPE TFHGLCTFHI RRNFIKYLGN  300
HYKENSDLPY MFGACMYEFE EVEQFNRVWE AMVKKHNLEN NEWLSGLYRI RDKWARCMMK  360
ERWTAGMRST QLSESLNAAI KNHLKLDHDL VQFFRHFNRV VDEKRHNELI VKYEMRQKLP  420
MVGLRQTPML VHASETYSST VFVAFQNEYG ESTAMVILRQ KNAAIFVELA VMRYD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-68	FAR1 family protein