PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077159.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GeBP

Protein Properties

Length: 461aa MW: 52277.8 Da PI: 4.7128

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	72.9	5.9e-23	184	275	7	97
DUF573 7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 ws++D lL+ +i+fk+++g +ps +++af+++vk++ ++s+sq+ eKirrLK K + v+k k g+ ++ ++++ +if+lsk+iWg XP_027077159.1 184 WSDDDVKCLLRSIIKFKTEKGLNPSTNMNAFCKYVKGKFGREFSRSQIYEKIRRLKSKGFNSVEKfEKGGDCFVHFNANELEIFKLSKSIWG 275 ********************************************************8888888355666667779999*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MESKKPTTHY PPPSTQSEEE ESEKGQDEES REGEEGSEEE SKSEHKEESE EEERSEGEEF 60 EVEENIHESP TQLDQMFSAQ KEIITPYQSS SDSGEEEDKE GGDDEELEIS THSPTSDFMI 120 KLIPPTKFTS KGSSSTSKRP LEDQGDDQKH LRSEKKAKGK ADEPNKQEPS AISAAIGEGA 180 GTKWSDDDVK CLLRSIIKFK TEKGLNPSTN MNAFCKYVKG KFGREFSRSQ IYEKIRRLKS 240 KGFNSVEKFE KGGDCFVHFN ANELEIFKLS KSIWGAETGD GTAIDRANET VKSMGKVVSF 300 VKQDKKEEKK KKTNVVKTFF RDDAEDDFQS KYPYLTKSFD VDSWSIMMNA DKIAGQRSFL 360 KENMSLIGHA KAMELEDKWK KLREAEVELL LKRSELMKEH CTLVLEVFDT CNRKLSKPSS 420 AHDGVPDTAE FVDGEDVYEN SAYNILGATF GYLQRLRENY G

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MESKKPTTHY PPPSTQSEEE ESEKGQDEES REGEEGSEEE SKSEHKEESE EEERSEGEEF  60
EVEENIHESP TQLDQMFSAQ KEIITPYQSS SDSGEEEDKE GGDDEELEIS THSPTSDFMI  120
KLIPPTKFTS KGSSSTSKRP LEDQGDDQKH LRSEKKAKGK ADEPNKQEPS AISAAIGEGA  180
GTKWSDDDVK CLLRSIIKFK TEKGLNPSTN MNAFCKYVKG KFGREFSRSQ IYEKIRRLKS  240
KGFNSVEKFE KGGDCFVHFN ANELEIFKLS KSIWGAETGD GTAIDRANET VKSMGKVVSF  300
VKQDKKEEKK KKTNVVKTFF RDDAEDDFQS KYPYLTKSFD VDSWSIMMNA DKIAGQRSFL  360
KENMSLIGHA KAMELEDKWK KLREAEVELL LKRSELMKEH CTLVLEVFDT CNRKLSKPSS  420
AHDGVPDTAE FVDGEDVYEN SAYNILGATF GYLQRLRENY G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	3e-11	GeBP family protein