PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077161.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GeBP
Protein Properties Length: 220aa    MW: 25519.6 Da    PI: 6.05
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57359.21.1e-1884175297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                      fqr+w  +Dei lL  +id  +++ ++p +  d f ++ ++ +sf+ ++ ql eKir+L++K+kk+ k+     ++ +++ h+   fels+++W
  XP_027077161.1  84 PFQRIWMRDDEIDLLHIMIDRMEQNAAQPRSYEDIFSHIREHPLSFQPTRIQLKEKIRHLREKYKKNAKE----PQKFMKSYHEVRLFELSSQVW 174
                     69*******************999999999999999999999************************9999....888999*************** PP

          DUF573  97 g 97 
                     g
  XP_027077161.1 175 G 175
                     8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MSLGESVYEY NSDNKKIMGI IHEAKLQESS HEDDTNCGKP LDRKLSNSSM NVPVTEEDVK  60
DAECFSKLDS SNNVDSRGKV QEKPFQRIWM RDDEIDLLHI MIDRMEQNAA QPRSYEDIFS  120
HIREHPLSFQ PTRIQLKEKI RHLREKYKKN AKEPQKFMKS YHEVRLFELS SQVWGVEQSD  180
FLQSSGTIKG NCHSKAKEIL EDEKDTFAVT SNSALHEQVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-17GeBP family protein