PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027077614.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 371aa MW: 43087 Da PI: 8.1545

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027077614.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.8	2.1e-06	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F r nL+ H r+H XP_027077614.1 54 YVCEICNQCFQREQNLQMHRRRH 76 9*********************9 PP
2	zf-C2H2	14.2	0.00013	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H + + XP_027077614.1 131 WVCEKCSKGYAVQSDYKAHVKIC 153 58*****************9987 PP
3	zf-C2H2	11	0.0013	161	179	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr + + H+ t+ XP_027077614.1 161 DCGRVFSRVEAFIEHQDTC 179 9***************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MLACQSFSLP SSEIFACPND GLLTKKKRRP AGTPDPDAEV VYLSPEMLME SDRYVCEICN 60 QCFQREQNLQ MHRRRHKVPW KLLKKDKQEV KKRVYVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNNKQ WVCEKCSKGY AVQSDYKAHV KICGTRGHSC DCGRVFSRVE AFIEHQDTCK 180 ARMTDYMCQG IPAADPFHHS TLSPDFLGDR SFHNNLSEMP RQKVLDSAFD GQNNNEPETE 240 GDYSNSVWYN YDAWNHSYYR ESMDAKVMPP EAVRLRDEAR ELSRVAKEEK ALAEEKRHQA 300 KCLIEMAKQE MTRARTIREQ AFYEFNAAEL MKDCATRHIS SNFVQITCNA CRRDFIQEKP 360 SQLRVPSHLP F

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MLACQSFSLP SSEIFACPND GLLTKKKRRP AGTPDPDAEV VYLSPEMLME SDRYVCEICN  60
QCFQREQNLQ MHRRRHKVPW KLLKKDKQEV KKRVYVCPEP TCLHHDPCHA LGDLVGIKKH  120
FRRKHSNNKQ WVCEKCSKGY AVQSDYKAHV KICGTRGHSC DCGRVFSRVE AFIEHQDTCK  180
ARMTDYMCQG IPAADPFHHS TLSPDFLGDR SFHNNLSEMP RQKVLDSAFD GQNNNEPETE  240
GDYSNSVWYN YDAWNHSYYR ESMDAKVMPP EAVRLRDEAR ELSRVAKEEK ALAEEKRHQA  300
KCLIEMAKQE MTRARTIREQ AFYEFNAAEL MKDCATRHIS SNFVQITCNA CRRDFIQEKP  360
SQLRVPSHLP F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	29	KKKRR
2	25	30	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-104	C2H2 family protein