PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027077745.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 149aa    MW: 17712.3 Da    PI: 9.1357
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027077745.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-14581381198
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     +  +rl +p+ f ++ +++ke+  + +l  e+ r+W vk+    +s+   ++kGW eF ka +L+ g+++ F+l +r  +  +++++ r
  XP_027077745.1  58 HHMHRLNIPRAFSRATKLEKEK--EAVLHGEDQREWPVKI--AERSE---IGKGWTEFRKAYKLEIGEICQFTLLKRfGDL-FHIQIKR 138
                     456899*******999999655..8***************..66664...8**********************99985554.6777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MHNRIRGKEL SSKFMASVGK QVLEIESEEG EDVETNERDG YFHLNAENPY FILRLKRHHM  60
HRLNIPRAFS RATKLEKEKE AVLHGEDQRE WPVKIAERSE IGKGWTEFRK AYKLEIGEIC  120
QFTLLKRFGD LFHIQIKRTS NKICKEEWA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.15e-07B3 family protein