PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078034.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 27960.6 Da PI: 8.5714

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_027078034.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	93.2	4.4e-31	81	173	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ +++ ++s+++e+ kLk ++e+Lqr qRhllG+dL++L++++L++Le+qLe+slk +Rs++++++l+q+++lq kek e+nkaL++kle XP_027078034.1 81 SHSAKEIEQSSYKEYLKLKGKYESLQRYQRHLLGDDLGPLNINDLEHLEHQLESSLKLVRSTRTQVMLDQLSDLQTKEKLWLEANKALERKLE 173 4466777899*********************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SNMLRTLERY QRCSYGAVEV SHSAKEIEQS SYKEYLKLKG KYESLQRYQR HLLGDDLGPL 120 NINDLEHLEH QLESSLKLVR STRTQVMLDQ LSDLQTKEKL WLEANKALER KLEDIYAENH 180 LHQSWGGGGE QSNTYSQQHS QSQGFFQPLE CSSGLQIGYN PASSSQITAV TNAQNVSGLV 240 PGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	2e-89	MIKC_MADS family protein