PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078064.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ERF
Protein Properties Length: 188aa    MW: 20825.4 Da    PI: 5.7375
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-194091256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y GVr ++ +g+++AeIrd + ng   r++lg+f+taeeAa a+++a+++++g+
  XP_027078064.1 40 HYVGVRKRP-WGKFAAEIRDSTRNG--MRVWLGTFDTAEEAALAYDQAALSMRGP 91
                    79*******.**********44465..*************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MDHGTKSFPG ASSSSKEING EEFTLARTRA KEDQYGKEKH YVGVRKRPWG KFAAEIRDST  60
RNGMRVWLGT FDTAEEAALA YDQAALSMRG PVAALNFPTE RVHESLQEMV LFSCEDGLSP  120
AAALKEAHKM RSMSKRRGKR KQLVKGDDLV VFEDLGPDLL DELLSESESS GFTTVAEAAM  180
GNLEQWPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135142KRRGKRKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-32ERF family protein