PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078146.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 231aa    MW: 25723.6 Da    PI: 9.2735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078146.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-125298354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++h+e+ErrRR+riN  +++Lr llPk       K +Ka+ L ++v+++++L
  XP_027078146.1 52 KSHSEAERRRRKRINGHLATLRNLLPKT-----IKADKASLLAEVVRCLREL 98
                    79*************************8.....69*************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MHTLPSFYEV GSCSESYNFL HEILNSREQL HLDNSNVNAI SMAEAKAVAA NKSHSEAERR  60
RRKRINGHLA TLRNLLPKTI KADKASLLAE VVRCLRELKK STEELSATEG DDQSNTAMKL  120
MFPSETDELK LCYDDGDSRT IKARLCCEDR PEMMIELKRA LNAVKAKVVK AEMATVGGRT  180
KTVLWLQASA AGEEGLATIR RALKVVVDRS IMLSTPGQAL PGNKRPRLYH C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-33bHLH family protein