PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078302.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 323aa    MW: 37511.9 Da    PI: 10.0071
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.2e-14301081498
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + + +p  f++++g +   +k++ l+ ++g sW v+l    ++++++l kGW+eF++   ++   f+vF++dg+s+f  +v +f+
  XP_027078302.1  30 RGMKIPTAFMRRYGDN--LKKMVWLKVPTGASWPVEL--LHSDEGTWLHKGWQEFAEYYSIERFHFLVFRYDGSSRF--HVVIFN 108
                     4699*********977..7789***************..999999***************************99999..998886 PP
2B352.49.9e-17226321198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                     f+  + ps+v+ s  + +p +f++++     ++++ +  l+  e  ++W+ ++  + +s+   + +GWkeFv +n+L +gD++vF+l+   + f 
  XP_027078302.1 226 FIVFMQPSYVSGSFTVNIPLTFVRDYltT--TQSHLDWELRLsEGKKKWSARC--TFHSRNAKIYRGWKEFVVENNLVTGDVCVFELVMGaKIF- 315
                     677899********************653..4455555555514559******..7777777899*********************98543777. PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                      +v+v+r
  XP_027078302.1 316 -NVTVYR 321
                     .666665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    
MANTTHSRRR NLVISDAPHF FKVVFFPINR GMKIPTAFMR RYGDNLKKMV WLKVPTGASW  60
PVELLHSDEG TWLHKGWQEF AEYYSIERFH FLVFRYDGSS RFHVVIFNTA ASEIEYPMES  120
GHHGMHDRQG QLPRRTSLVR KPEEIYSDDD DDDESIEIVE EISAPCKGKK RGRKSENTHQ  180
IGRDDGFVHG LQFGGRIKAR GRSALKKSTS IAYQRAKAFK SKCPFFIVFM QPSYVSGSFT  240
VNIPLTFVRD YLTTTQSHLD WELRLSEGKK KWSARCTFHS RNAKIYRGWK EFVVENNLVT  300
GDVCVFELVM GAKIFNVTVY RRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-45B3 family protein