PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027078303.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 196aa MW: 22244 Da PI: 9.292

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027078303.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.1	8.5e-15	26	114	2	99
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 fkv s+v+ +g +++p f++ehg++ +k + l+ ++g sW v l +++ +++l+kGW+eF++ ++ f+vF+++g+s+f +v + XP_027078303.1 26 FKVV-LSSVG-QG-IRIPTAFMREHGES--LKKVVWLKVPTGASWPVAL--LQTDVGTWLRKGWREFAEYYTIDRSYFLVFRYEGNSQF--YVII 111 5555.23444.34.89*******855..778999*********..999999**************************9999..9999 PP E-S CS B3 97 frk 99 f+ XP_027078303.1 112 FDP 114 875 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MATGQRGKKG SHQTTNNPAK NPPHFFKVVL SSVGQGIRIP TAFMREHGES LKKVVWLKVP 60 TGASWPVALL QTDVGTWLRK GWREFAEYYT IDRSYFLVFR YEGNSQFYVI IFDPTASEIE 120 YPVEAGKGVH DNDLDQLPRR RTNPVQIFDE IESDDDSIEI LEEIPAAASS SHAHNRRKSA 180 QVDGNRRSIR AKKESI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	2e-23	B3 family protein