PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027078446.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 528aa    MW: 59319.8 Da    PI: 7.9611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027078446.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.9e-21162252199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k l++s+v++  ++ lp +f+++h   +++++ ++ledesg+++e+k+i +k++    l++GW++Fv a++L egD+++F+l+g ++f  +v 
  XP_027078446.1 162 FVKLLVRSHVGSCFWMGLPVPFCKTHL--PRKDTAVVLEDESGEQFEIKYISEKTG----LSAGWRKFVAAHKLVEGDVLIFQLIGPTTF--KVL 248
                     89************************5..456779***************666666....*************************97777..787 PP

                     EE-S CS
              B3  96 vfrk 99 
                     v+r+
  XP_027078446.1 249 VIRA 252
                     7775 PP

Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MRLKIKPVQP SPSPEVQYQE NHQVTADQEV LKTEAVEEEG QACGWLIPDG NNPMISNSEN  60
NKNNPPELSP TTTPVPQYLG KRKRKPKELI DEISPIIVRR KKKQPSVSKS EQQAITDGGG  120
KHVSKQEKSA DDGSRNPVQV KPATMIRAEE VQSSLGNEYP SFVKLLVRSH VGSCFWMGLP  180
VPFCKTHLPR KDTAVVLEDE SGEQFEIKYI SEKTGLSAGW RKFVAAHKLV EGDVLIFQLI  240
GPTTFKVLVI RANDLTEVDG ALSLLNLDTL AKQSDAIVEG NVDLQNKKKK RPKSLPLTVV  300
QKKKQKAGLS RSILPHLGHL EEQSGNDSDE VASEVLEGSK FSADAVRFRD IKGFEEFRIM  360
VNGVCIDSEL PEHVRRKYYE LCCSKNVFLH ERFLPGLHCK LAAGMIFEAV NTAEAIRACK  420
VTTSRKEFEK WEKSLRSFEL LGMNVGFLRA RMRRLLSMAF EGEGASEAKR YWEAKNARAC  480
TEDEIRNLEA KLVELKATSE KYDAEIEALK SKAESYEILF QEEVNAPW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
181103KRKRKPKELIDEISPIIVRRKKK
282104KRKRKPKELIDEISPIIVRRKKK
382102RKRKPKELIDEISPIIVRRKK
483105KRKRKPKELIDEISPIIVRRKKK
5287304KKKKRPKSLPLTVVQKKK
6287306KKKKRPKSLPLTVVQKKKQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-39B3 family protein