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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_027078446.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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| Family | B3 | ||||||||
| Protein Properties | Length: 528aa MW: 59319.8 Da PI: 7.9611 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 66.5 | 3.9e-21 | 162 | 252 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
f+k l++s+v++ ++ lp +f+++h +++++ ++ledesg+++e+k+i +k++ l++GW++Fv a++L egD+++F+l+g ++f +v
XP_027078446.1 162 FVKLLVRSHVGSCFWMGLPVPFCKTHL--PRKDTAVVLEDESGEQFEIKYISEKTG----LSAGWRKFVAAHKLVEGDVLIFQLIGPTTF--KVL 248
89************************5..456779***************666666....*************************97777..787 PP
EE-S CS
B3 96 vfrk 99
v+r+
XP_027078446.1 249 VIRA 252
7775 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 528 aa Download sequence |
MRLKIKPVQP SPSPEVQYQE NHQVTADQEV LKTEAVEEEG QACGWLIPDG NNPMISNSEN 60 NKNNPPELSP TTTPVPQYLG KRKRKPKELI DEISPIIVRR KKKQPSVSKS EQQAITDGGG 120 KHVSKQEKSA DDGSRNPVQV KPATMIRAEE VQSSLGNEYP SFVKLLVRSH VGSCFWMGLP 180 VPFCKTHLPR KDTAVVLEDE SGEQFEIKYI SEKTGLSAGW RKFVAAHKLV EGDVLIFQLI 240 GPTTFKVLVI RANDLTEVDG ALSLLNLDTL AKQSDAIVEG NVDLQNKKKK RPKSLPLTVV 300 QKKKQKAGLS RSILPHLGHL EEQSGNDSDE VASEVLEGSK FSADAVRFRD IKGFEEFRIM 360 VNGVCIDSEL PEHVRRKYYE LCCSKNVFLH ERFLPGLHCK LAAGMIFEAV NTAEAIRACK 420 VTTSRKEFEK WEKSLRSFEL LGMNVGFLRA RMRRLLSMAF EGEGASEAKR YWEAKNARAC 480 TEDEIRNLEA KLVELKATSE KYDAEIEALK SKAESYEILF QEEVNAPW |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 81 | 103 | KRKRKPKELIDEISPIIVRRKKK |
| 2 | 82 | 104 | KRKRKPKELIDEISPIIVRRKKK |
| 3 | 82 | 102 | RKRKPKELIDEISPIIVRRKK |
| 4 | 83 | 105 | KRKRKPKELIDEISPIIVRRKKK |
| 5 | 287 | 304 | KKKKRPKSLPLTVVQKKK |
| 6 | 287 | 306 | KKKKRPKSLPLTVVQKKKQK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19184.1 | 2e-39 | B3 family protein | ||||




