PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027079893.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 672aa MW: 78140 Da PI: 7.39

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027079893.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.6	2.1e-23	60	144	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YAk+ GF +r+s+s +++ +e +++++ Cs g++++++ + ++r+etrtgC a++++k+ ++++w++ ++el+HnH ++ XP_027079893.1 60 DFYNGYAKDQGFGIRVSNSWFRSKRKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIKLVDSKRWRIVEVELQHNHLVS 144 6*******************999*************99888.....9********************************775 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MEVVCLNSEP AFNEGDEYEH EGDSATGENA DELCAAPHLK REPPPPTVGL EFDSFDEAYD 60 FYNGYAKDQG FGIRVSNSWF RSKRKERYRA KLSCSSAGFK KKSEANNPRP ETRTGCPAMI 120 VIKLVDSKRW RIVEVELQHN HLVSPEIKRF YKSHKKMILA AQKSQQAEPV KEIHTIKLYR 180 TSVINAAPNG YSKVKERDVR HPTDHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD 240 DEGRLKNIFW ADARSRSAYI YFSDAIAIDT TCLTNKYELP LVSFVGVNHH GQSVLLGCGF 300 LGHESVEYFV WMFRSWLTCM LGRHPRVILT DQSKSLQMAI SEVFPGTRHC YCLSYIMQRV 360 PEKLGGLRGY EAIRKQLNQA VYNSMKIAEF ETAWGSMVGQ HGLGENKWLQ SLHEDRQRWV 420 PVYIKDTSFV GMIPVKENEV SKPLFDGYVH KHTSFKEFLD KNDLALQRKL MKEATGDTES 480 RNCSFELRTK CNFELQLSKV YTKQIFEKFQ IEVEGMYSCF NTRQVNINGP IITYAVKERV 540 EVEESEKEVR QYEVLYETTN MEIRCICSLF NFRGYLCRHA LNVFNYNGVE EIPSQYILPR 600 WSKDYKRRFP LDPFPNDVDL NDYVLRYNHL LSRAIQVIEE GAQSRECWKA SLQGLEELCR 660 KFALENVDEV YL

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MEVVCLNSEP AFNEGDEYEH EGDSATGENA DELCAAPHLK REPPPPTVGL EFDSFDEAYD  60
FYNGYAKDQG FGIRVSNSWF RSKRKERYRA KLSCSSAGFK KKSEANNPRP ETRTGCPAMI  120
VIKLVDSKRW RIVEVELQHN HLVSPEIKRF YKSHKKMILA AQKSQQAEPV KEIHTIKLYR  180
TSVINAAPNG YSKVKERDVR HPTDHSKHLE LKEGDAHAVY NYFCRMKLTN PNFFYLMDLD  240
DEGRLKNIFW ADARSRSAYI YFSDAIAIDT TCLTNKYELP LVSFVGVNHH GQSVLLGCGF  300
LGHESVEYFV WMFRSWLTCM LGRHPRVILT DQSKSLQMAI SEVFPGTRHC YCLSYIMQRV  360
PEKLGGLRGY EAIRKQLNQA VYNSMKIAEF ETAWGSMVGQ HGLGENKWLQ SLHEDRQRWV  420
PVYIKDTSFV GMIPVKENEV SKPLFDGYVH KHTSFKEFLD KNDLALQRKL MKEATGDTES  480
RNCSFELRTK CNFELQLSKV YTKQIFEKFQ IEVEGMYSCF NTRQVNINGP IITYAVKERV  540
EVEESEKEVR QYEVLYETTN MEIRCICSLF NFRGYLCRHA LNVFNYNGVE EIPSQYILPR  600
WSKDYKRRFP LDPFPNDVDL NDYVLRYNHL LSRAIQVIEE GAQSRECWKA SLQGLEELCR  660
KFALENVDEV YL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1 family protein