PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080584.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 188aa    MW: 20963 Da    PI: 4.5454
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080584.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.5e-1272160195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ +l +s+v+ + +l lp + + e      + +  ++ ++ g+ W+  +   + + +  ++  Wk+F+++n+Lk+gD + F+l++++ ++ ++k
  XP_027080584.1  72 FDIILAKSHVGPRFQLFLPTTIVPELP----SAMVPVVLTSCGKNWNTVY--YGDRTGKRFGPSWKKFASDNELKTGDCCFFELMESTMAQIKFK 160
                     667788999999999****99997774....23445677789********..5555555599*********************997655545555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
MSNQPVQPFL CAVKEEPFMT DSDTDEKPYV DLINSKSVPS GENSQLLSGS SSGMAEMDDI  60
EYWTISGKKP YFDIILAKSH VGPRFQLFLP TTIVPELPSA MVPVVLTSCG KNWNTVYYGD  120
RTGKRFGPSW KKFASDNELK TGDCCFFELM ESTMAQIKFK VIILRGDLPV LRFAEGDGET  180
PEKAIIIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-08B3 family protein