PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080585.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family B3
Protein Properties Length: 170aa    MW: 18916.6 Da    PI: 4.5953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080585.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-1254142195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+ +l +s+v+ + +l lp + + e      + +  ++ ++ g+ W+  +   + + +  ++  Wk+F+++n+Lk+gD + F+l++++ ++ ++k
  XP_027080585.1  54 FDIILAKSHVGPRFQLFLPTTIVPELP----SAMVPVVLTSCGKNWNTVY--YGDRTGKRFGPSWKKFASDNELKTGDCCFFELMESTMAQIKFK 142
                     667888999999999****99997774....23445677789********..5555555599*********************997655545555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MTDSDTDEKP YVDLINSKSV PSGENSQLLS GSSSGMAEMD DIEYWTISGK KPYFDIILAK  60
SHVGPRFQLF LPTTIVPELP SAMVPVVLTS CGKNWNTVYY GDRTGKRFGP SWKKFASDNE  120
LKTGDCCFFE LMESTMAQIK FKVIILRGDL PVLRFAEGDG ETPEKAIIIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-08B3 family protein