PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027080699.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARR-B

Protein Properties

Length: 585aa MW: 65032.7 Da PI: 6.038

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027080699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	89	4.3e-28	342	395	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR++ XP_027080699.1 342 SKVDWTPELHKKFVQAVEQL-GIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 395 6899**************.******************************96 PP
2	Myb_DNA-binding	44.6	3.4e-14	344	393	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_027080699.1 344 VDWTPELHKKFVQAVEQLGIDqaIPSRILELMKvEGLTRHNVASHLQKYR 393 57***********************************************7 PP
3	Response_reg	34.5	1e-12	51	156	2	109
EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS Response_reg 2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 l+++ + + +r le+ +y +v + + eal + +k +++ ++ ++ +++G+ +k +++++ +lp i++++++ +++ +++ +Ga XP_027080699.1 51 LLIESDACSAVEMRLKLEEMDY-IVSIFCNENEALSAISNKSecFHVAIVEVNTQNSSGI--FKFLETAN-DLPTIMISDNNCISTMMKCIALGA 141 666666666667778889**.***********999999*********995..78888877.9******************* PP SEEEESS--HHHHHH CS Response_reg 95 kdflsKpfdpeelvk 109 +fl Kp++ ++l + XP_027080699.1 142 VEFLQKPVSDDKLQN 156 ********99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence
MFDPKFLMHL VLSLSCFRSQ CCKKDDAMPA MVCTADELLG WKDFPKGLKV LLIESDACSA 60 VEMRLKLEEM DYIVSIFCNE NEALSAISNK SECFHVAIVE VNTQNSSGIF KFLETANDLP 120 TIMISDNNCI STMMKCIALG AVEFLQKPVS DDKLQNIWQH VVHKQAFNAG GKDVSEALKP 180 VKESLISMLQ LPFGNAETGK QASVEAEQEN NQDLLSGCDK YPAPSTPQLK QGERSLDDGD 240 CQDQANFSME QDSAEQDGEC KSVETTCGNS IFECTALGSP ASGEDAVKEE HESTNCCRTE 300 INTTTCYEGK DRPSNKTSNA AGLNRSSAVR DTCGIKASKK RSKVDWTPEL HKKFVQAVEQ 360 LGIDQAIPSR ILELMKVEGL TRHNVASHLQ KYRMHRRHIL PKENERRWPH PGGSAQRNYY 420 PHKPVMAFPP YHPNHTIPGG QVYPAWIPPG TYTGGIHIWG SPYYPGWQVP NESWYWKPYS 480 VTHADAWGCP VMPQTVGSYP QFAQQTAPDF QTTKEMQYTG STLLNPSDLH AAEEVIDQVV 540 KEAISKPWLP LPLGLKPPST ECVLNELSKQ GISKIPPHTN APNIR

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence

MFDPKFLMHL VLSLSCFRSQ CCKKDDAMPA MVCTADELLG WKDFPKGLKV LLIESDACSA  60
VEMRLKLEEM DYIVSIFCNE NEALSAISNK SECFHVAIVE VNTQNSSGIF KFLETANDLP  120
TIMISDNNCI STMMKCIALG AVEFLQKPVS DDKLQNIWQH VVHKQAFNAG GKDVSEALKP  180
VKESLISMLQ LPFGNAETGK QASVEAEQEN NQDLLSGCDK YPAPSTPQLK QGERSLDDGD  240
CQDQANFSME QDSAEQDGEC KSVETTCGNS IFECTALGSP ASGEDAVKEE HESTNCCRTE  300
INTTTCYEGK DRPSNKTSNA AGLNRSSAVR DTCGIKASKK RSKVDWTPEL HKKFVQAVEQ  360
LGIDQAIPSR ILELMKVEGL TRHNVASHLQ KYRMHRRHIL PKENERRWPH PGGSAQRNYY  420
PHKPVMAFPP YHPNHTIPGG QVYPAWIPPG TYTGGIHIWG SPYYPGWQVP NESWYWKPYS  480
VTHADAWGCP VMPQTVGSYP QFAQQTAPDF QTTKEMQYTG STLLNPSDLH AAEEVIDQVV  540
KEAISKPWLP LPLGLKPPST ECVLNELSKQ GISKIPPHTN APNIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-147	ARR-B family protein