PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027080980.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 233aa    MW: 25736.7 Da    PI: 10.6878
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027080980.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind221.85.7e-6866233130301
       GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYk 224
                     +  +++  ++++ ++k+   +++ +      +++ k++kkk++++kk++++++    ++ e+k+ dlv ++ ++D s++P P CsCtG+ r CYk
  XP_027080980.1  66 HGPTKNRFVTKPVKIKKDWPPSNDA--CPSNKSRPKQPKKKPSTTKKTKRPPKIG--VNIERKNPDLVYDEAKFDFSRVPQPFCSCTGVARACYK 156
                     4444555555555555555555333..3334456667777778888888888865..99************************************ PP

       GAGA_bind 225 WGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     WG+G WqS+CC t++ +yPLP+s+ r+gaR+ grKmS+ga++klL + a+eG dls+p+DLk+hWAkHGtnkfvti+
  XP_027080980.1 157 WGSGSWQSSCCNTNLCQYPLPMSPSRPGARVPGRKMSHGAYTKLLCRFATEGRDLSQPIDLKNHWAKHGTNKFVTIK 233
                     ****************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVAFSKRCSM ASEVNHTEPP FPQFPGAYPG ASFSSSGFAF HPSQATQMDS KAGIAAVPIR  60
SVPPLHGPTK NRFVTKPVKI KKDWPPSNDA CPSNKSRPKQ PKKKPSTTKK TKRPPKIGVN  120
IERKNPDLVY DEAKFDFSRV PQPFCSCTGV ARACYKWGSG SWQSSCCNTN LCQYPLPMSP  180
SRPGARVPGR KMSHGAYTKL LCRFATEGRD LSQPIDLKNH WAKHGTNKFV TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.37e-55BBR-BPC family protein