PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027081047.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 407aa MW: 45728.9 Da PI: 7.0747

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027081047.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.1	1.4e-29	245	329	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r+++e++++r k+plWe++s+ m++ gf+rs+k+Ckekwen+nk++kk +e++k+ ++ +tc+yfdql+ XP_027081047.1 245 RWPKAEVEALIQIRSSLEQKFQRPGIKGPLWEQISNSMASMGFQRSAKRCKEKWENINKYFKKSRENAKQC-RKKFKTCQYFDQLD 329 8******************************************************************97.66678******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MHQNKYYKSS EDTEQMNSSL ENSKNRLFGE LESICRSASD ASEANKTGGA SAGNLATTFS 60 TCLPITLDKH TTNAGATAAG AAIGHCHDGS ESFSGHEAPV AVVSKNKKRK KLKDELSSMA 120 IFFEGLVHQL MDHREALHSN FMNAIERLDK ERREREDAWR RQELEKLEQD MAARARERAL 180 ASSREASIVS YLEKITGQSI KLPPRNHPSD FQPAMISSGA MNGELSPSTS KVCRDDLSIN 240 MTNRRWPKAE VEALIQIRSS LEQKFQRPGI KGPLWEQISN SMASMGFQRS AKRCKEKWEN 300 INKYFKKSRE NAKQCRKKFK TCQYFDQLDQ LHSKSQLANG GSYSCSSSSE HQAKPNNENQ 360 LPNPIEGLVP ARNFRQGEFY CIPSMNVSEE EEEEGEDGNV DYPDEGD

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MHQNKYYKSS EDTEQMNSSL ENSKNRLFGE LESICRSASD ASEANKTGGA SAGNLATTFS  60
TCLPITLDKH TTNAGATAAG AAIGHCHDGS ESFSGHEAPV AVVSKNKKRK KLKDELSSMA  120
IFFEGLVHQL MDHREALHSN FMNAIERLDK ERREREDAWR RQELEKLEQD MAARARERAL  180
ASSREASIVS YLEKITGQSI KLPPRNHPSD FQPAMISSGA MNGELSPSTS KVCRDDLSIN  240
MTNRRWPKAE VEALIQIRSS LEQKFQRPGI KGPLWEQISN SMASMGFQRS AKRCKEKWEN  300
INKYFKKSRE NAKQCRKKFK TCQYFDQLDQ LHSKSQLANG GSYSCSSSSE HQAKPNNENQ  360
LPNPIEGLVP ARNFRQGEFY CIPSMNVSEE EEEEGEDGNV DYPDEGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	5e-36	Trihelix family protein